SNP Profiles of AMAZ3 2   View Data

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 Key

 1234567891011121314
_Input profile
CCAACCTTTTAATTTTCTCCAAGGCCAA
1._GC-03-022-2-11
CCAACCTTTTAATTTTCTCCAAGGCCAA
2._GC-03-022-2-11
CCAACCTTTTAATTTTCTCCAAGGCCAA
3._GC-03-022-2-11
CCAACCTTTTAATTTTCTCCAAGGCCAA
4._GC-03-022-2-11
CCAACCTTTTAATTTTCTCCAAGGCCAA
5._GC-03-022-2-11
CCAACCTTTTAATTTTCTCCAAGGCCAA
6._GC-03-022-2-11
CCAACCTTTTAATTTTCTCCAAGGCCAA
7._AMAZ_3_/2
CCAACCTTTTAATTTTCTCCAAGGCCAA
8._AMAZ_3_/2
CCAACCTTTTAATTTTCTCCAAGGCCAA
9._AMAZ_3_/2
CCAACCTTTTAATTTTCTCCAAGGCCAA
10._AMAZ_3_/2
CCAACCTTTTAATTTTCTCCAAGGCCAA
11._AMAZ_3_/2
CCAACCTTTTAATTTTCTCCAAGGCCAA
12._AMAZ_3_/2
CCAACCTTTTAATTTTCTCCAAGGCCAA
13._GC-03-022-2-11
CCAACCTT_AATTTTCTCCAAGGCCAA
14._GC-03-022-2-11
CCAACCTTTT_TTTTCTCCAAGGCCAA
15._GC-03-022-2-11
CCAACCTTTTAATTTTCTCCAAGGCCAA
16._GC-03-022-2-11
CC_CCTTTTAATTTTCTCCAAGGCCAA
17._AMAZ_3_/2
CCAACCTTTTAATTTTCTCCAAGGCCAA
18._AMAZ_3_/2
CCAACCTTTT_TTTTCTCCAAGGCCAA
19._AMAZ_3_/2
CCAACCTT_AATTTTCTCCAAGGCCAA
20._AMAZ_3_/2
CC_CCTTTTAATTTTCTCCAAGGCCAA
21._RUQ_91
_AACC-___TT____CCAA
22._RUQ_91
__CC____TT_CC_GG_AA
23._RUQ_91
CCAGCCTTTTAATTTTCTCCAAGGCTAA
24._AMAZ_3_/2
CCAGCCTTTTAATTGTCCCCAAAGCCAG
25._GC-03-022-2-11
CCAGCCTTTTAATTGTCCCCAAAGCCAG
26._GC-03-022-2-11
CCAGCCTTTTAATTGTCCCCAAAGCCAG
27._GC-03-022-2-11
CCAGCCTTTTAATTGTCCCCAAAGCCAG
28._AMAZ_3_/2
CCAGCCTTTTAATTGTCCCCAAAGCCAG
29._AMAZ_3_/2
CCAGCCTTTTAATTGTCCCCAAAGCCAG
30._GC-03-022-2-11
CCAGCCTTTTAATTGTCCCCAAAGCCAG
31._AMAZ_3_/2
CCAGCCTTTTAATTGTCCCCAAAGCCAG
32._RUQ_91
GGAAGGAAAAAAAAAA__AAGGGGAA
 1516171819202122232425262728
_Input profile
CTATGGCTCCCGGTAACCAACCGGCCCC
1._GC-03-022-2-11
CTATGGCTCCCGGTAACCAA_GGCCCC
2._GC-03-022-2-11
CTATGGCTCCCGGTAACCAA_GGCCCC
3._GC-03-022-2-11
CTATGGCTCCCGGTAACCAA_GGCCCC
4._GC-03-022-2-11
CTATGGCTCCCGGTAACCAA_GGCCCC
5._GC-03-022-2-11
CTATGGCTCCCGGTAACCAA_GGCCCC
6._GC-03-022-2-11
CTATGGCTCCCGGTAACCAA_GGCCCC
7._AMAZ_3_/2
CTATGGCTCCCGGTAACCAA_GGCCCC
8._AMAZ_3_/2
CTATGGCTCCCGGTAACCAA_GGCCCC
9._AMAZ_3_/2
CTATGGCTCCCGGTAACCAA_GGCCCC
10._AMAZ_3_/2
CTATGGCTCCCGGTAACCAA_GGCCCC
11._AMAZ_3_/2
CTATGGCTCCCGGTAACCAA_GGCCCC
12._AMAZ_3_/2
CTATGGCTCCCGGTAACCAA_GGCCCC
13._GC-03-022-2-11
CTATGGCTCCCGGTAACCAA_GGCCCC
14._GC-03-022-2-11
CTATGGCTCCCGGTAACCAA_GGCCCC
15._GC-03-022-2-11
CTATGGCTCCCGGTAACCAA_GGCCCC
16._GC-03-022-2-11
CTATGGCTCCCGGTAACCAA_GGCCCC
17._AMAZ_3_/2
CTATGGCTCCCGGTAACCAA_GGCCCC
18._AMAZ_3_/2
CTATGGCTCCCGGTAACCAA_GGCCCC
19._AMAZ_3_/2
CTATGGCTCCCGGTAACCAA_GGCCCC
20._AMAZ_3_/2
CTATGGCTCCCGGTAACCAA_GGCCCC
21._RUQ_91
____CC-GT_CCAACC-CCCC
22._RUQ_91
_____CGGTAA_AA___CC
23._RUQ_91
CTATGGCTCCCGGTAACCAACCGGCCCC
24._AMAZ_3_/2
CTAACGCCCTGGGGAACTACGGGGCTCC
25._GC-03-022-2-11
CTAACGCCCTGGGGAACTACGGGGCTCC
26._GC-03-022-2-11
CTAACGCCCTGGGGAACTACGGGGCTCC
27._GC-03-022-2-11
CTAACGCCCTGGGGAACTACGGGGCTCC
28._AMAZ_3_/2
CTAACGCCCTGGGGAACTACGGGGCTCC
29._AMAZ_3_/2
CTAACGCCCTGGGGAACTACGGGGCTCC
30._GC-03-022-2-11
CTAACGCCCTGGGG_CTACGGGGCTCC
31._AMAZ_3_/2
CTAACGCCCTGGGG_CTACGGGGCTCC
32._RUQ_91
AGATGGAGGGCGAC_GGAACCCC_CC
 293031323334353637383940  
_Input profile
AAGGATTTAAGGAACCGTAAATGGX_XX_X
1._GC-03-022-2-11
AAGGATTTAAGGAACCGTAAATGGX_XX_X
2._GC-03-022-2-11
AAGGATTTAAGGAACCGTAAATGGX_XX_X
3._GC-03-022-2-11
AAGGATTTAAGGAACCGTAAATGGX_XX_X
4._GC-03-022-2-11
AAGGATTTAAGGAACCGTAAATGGX_XX_X
5._GC-03-022-2-11
AAGGATTTAAGGAACCGTAAATGGX_XX_X
6._GC-03-022-2-11
AAGGATTTAAGGAACCGTAAATGGX_XX_X
7._AMAZ_3_/2
AAGGATTTAAGGAACCGTAAATGGX_XX_X
8._AMAZ_3_/2
AAGGATTTAAGGAACCGTAAATGGX_XX_X
9._AMAZ_3_/2
AAGGATTTAAGGAACCGTAAATGGX_XX_X
10._AMAZ_3_/2
AAGGATTTAAGGAACCGTAAATGGX_XX_X
11._AMAZ_3_/2
AAGGATTTAAGGAACCGTAAATGGX_XX_X
12._AMAZ_3_/2
AAGGATTTAAGGAACCGTAAATGGX_XX_X
13._GC-03-022-2-11
AAGGATTTAAGGAACCGTAAATGGX_XX_X
14._GC-03-022-2-11
AAGGATTTAAGGAACCGTAAATGGX_XX_X
15._GC-03-022-2-11
AAGGATTTAAGGAA_GTAAATGGX_XX_X
16._GC-03-022-2-11
AAGGATTTAAGGAACCGTAAATGGX_XX_X
17._AMAZ_3_/2
AAGGATTTAAGGAA_GTAAATGGX_XX_X
18._AMAZ_3_/2
AAGGATTTAAGGAACCGTAAATGGX_XX_X
19._AMAZ_3_/2
AAGGATTTAAGGAACCGTAAATGGX_XX_X
20._AMAZ_3_/2
AAGGATTTAAGGAACCGTAAATGGX_XX_X
21._RUQ_91
-_AT-AAGGAACCGTAA__X_XX_X
22._RUQ_91
____AA____AA__X_XX_X
23._RUQ_91
AAGGATTTAAGGAACCGTAAATGGX_XX_X
24._AMAZ_3_/2
AGGGATCTGGCCACCTGGACTTGGX_XX_X
25._GC-03-022-2-11
AGGGATCTGGCCACCTGGACTTGGX_XX_X
26._GC-03-022-2-11
AGGGATCTGGCCACCTGGACTTGGX_XX_X
27._GC-03-022-2-11
AGGGATCTGGCCACCTGGACTTGGX_XX_X
28._AMAZ_3_/2
AGGGATCTGGCCACCTGGACTTGGX_XX_X
29._AMAZ_3_/2
AGGGATCTGGCCACCTGGACTTGGX_XX_X
30._GC-03-022-2-11
AGGGATCTGGCCACCTGGACTTGGX_XX_X
31._AMAZ_3_/2
AGGGATCTGGCCACCTGGACTTGGX_XX_X
32._RUQ_91
_GGATAAAACCAAGGACAAATGGX_XX_X

Input profile: AMAZ_3_/2

 
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Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P97 225
 Dapeng Zhang, 2016

1._AMAZ_3_/2 GC-03-022-2-11

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

2._AMAZ_3_/2 GC-03-022-2-11

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP2
 Mars, 2018

3._AMAZ_3_/2 GC-03-022-2-11

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

4._AMAZ_3_/2 GC-03-022-2-11

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

5._AMAZ_3_/2 GC-03-022-2-11

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

6._AMAZ_3_/2 GC-03-022-2-11

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP4
 Mars, 2018

7._AMAZ_3_/2

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 12
 Dapeng Zhang, 2016

8._AMAZ_3_/2

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 13
 Dapeng Zhang, 2016

9._AMAZ_3_/2

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 15
 Dapeng Zhang, 2016

10._AMAZ_3_/2

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 1 > FP
 Dapeng Zhang, 2016

11._AMAZ_3_/2

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 14 > F
 Dapeng Zhang, 2016

12._AMAZ_3_/2

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 5 > FP
 Dapeng Zhang, 2016

13._AMAZ_3_/2 GC-03-022-2-11

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

14._AMAZ_3_/2 GC-03-022-2-11

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

15._AMAZ_3_/2 GC-03-022-2-11

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

16._AMAZ_3_/2 GC-03-022-2-11

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

17._AMAZ_3_/2

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 7
 Dapeng Zhang, 2016

18._AMAZ_3_/2

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 8
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

19._AMAZ_3_/2

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 9
 Dapeng Zhang, 2016

20._AMAZ_3_/2

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 16
 Dapeng Zhang, 2016

21._AMAZ_3_/2 RUQ_91

identical
19 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

22._AMAZ_3_/2 RUQ_91

identical
12 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

23._AMAZ_3_/2 RUQ_91

97.5 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

24._AMAZ_3_/2

66.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 10
 Dapeng Zhang, 2016

25._AMAZ_3_/2 GC-03-022-2-11

66.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

26._AMAZ_3_/2 GC-03-022-2-11

66.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

27._AMAZ_3_/2 GC-03-022-2-11

66.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

28._AMAZ_3_/2

66.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

29._AMAZ_3_/2

66.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 3 > FP
 Dapeng Zhang, 2016

30._AMAZ_3_/2 GC-03-022-2-11

65.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

31._AMAZ_3_/2

65.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 4
 Dapeng Zhang, 2016

32._AMAZ_3_/2 RUQ_91

51.4 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25